NG-meta-profiler¶
NG-meta-profiler is a collection of predefined pipelines for processing shotgun metagenomes.
human-gut.ngl
for human gut samplesmarine.ngl
for marine samplesmouse-gut.ngl
for mouse gut samplesdog-gut.ngl
for dog gut samplespig-gut.ngl
for pig gut samples
These are predefined, but users are encouraged to adapt them to their specific needs.
INSTALL¶
- install ngless
- install ng-meta-profiler by downloading the appropriate pipeline from github: https://github.com/ngless-toolkit/ng-meta-profiler
USAGE¶
To use the profiler, select the appropriate script (e.g., human-gut.ngl
for human gut samples), put all the FastQ files from the same sample in the
same directory (INPUT-DIRECTORY
) with the extension .fq.gz
or fastq.gz
and run:
ngless human-gut.ngl INPUT-DIRECTORY OUTPUT-DIRECTORY